/**
    *
    * Copyright 2004 The Apache Software Foundation
    *
    * Licensed under the Apache License, Version 2.0 (the "License");
    * you may not use this file except in compliance with the License.
    * You may obtain a copy of the License at
    *
    * http://www.apache.org/licenses/LICENSE-2.0
   *
   * Unless required by applicable law or agreed to in writing, software
   * distributed under the License is distributed on an "AS IS" BASIS,
   * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   * See the License for the specific language governing permissions and
   * limitations under the License.
   */
  package org.codehaus.plexus.archiver.jar;
  
  import javax.inject.Named;
  
  import java.io.ByteArrayInputStream;
  import java.io.ByteArrayOutputStream;
  import java.io.File;
  import java.io.IOException;
  import java.io.InputStream;
  import java.io.OutputStreamWriter;
  import java.io.PrintWriter;
  import java.nio.charset.StandardCharsets;
  import java.util.ArrayList;
  import java.util.Collections;
  import java.util.Comparator;
  import java.util.Enumeration;
  import java.util.HashSet;
  import java.util.List;
  import java.util.Set;
  import java.util.SortedMap;
  import java.util.StringTokenizer;
  import java.util.TreeMap;
  
  import org.apache.commons.compress.archivers.zip.ZipArchiveEntry;
  import org.apache.commons.compress.archivers.zip.ZipArchiveOutputStream;
  import org.apache.commons.compress.archivers.zip.ZipFile;
  import org.apache.commons.compress.parallel.InputStreamSupplier;
  import org.codehaus.plexus.archiver.ArchiverException;
  import org.codehaus.plexus.archiver.zip.ConcurrentJarCreator;
  import org.codehaus.plexus.archiver.zip.ZipArchiver;
  
  import static org.codehaus.plexus.archiver.util.Streams.bufferedOutputStream;
  import static org.codehaus.plexus.archiver.util.Streams.fileInputStream;
  import static org.codehaus.plexus.archiver.util.Streams.fileOutputStream;
  
  /**
   * Base class for tasks that build archives in JAR file format.
   */
  @Named("jar")
  public class JarArchiver extends ZipArchiver {
  
      /**
       * the name of the meta-inf dir
       */
      private static final String META_INF_NAME = "META-INF";
  
      /**
       * The index file name.
       *
       * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
       */
      @Deprecated
      private static final String INDEX_NAME = "META-INF/INDEX.LIST";
  
      /**
       * The manifest file name.
       */
      private static final String MANIFEST_NAME = "META-INF/MANIFEST.MF";
  
      /**
       * merged manifests added through addConfiguredManifest
       */
      private Manifest configuredManifest;
  
      /**
       * shadow of the above if upToDate check alters the value
       */
      private Manifest savedConfiguredManifest;
  
      /**
       * merged manifests added through filesets
       */
      private Manifest filesetManifest;
  
      /**
       * Manifest of original archive, will be set to null if not in
       * update mode.
       */
      private Manifest originalManifest;
  
      /**
       * whether to merge fileset manifests;
       * value is true if filesetmanifest is 'merge' or 'mergewithoutmain'
      */
     private FilesetManifestConfig filesetManifestConfig;
 
     /**
      * whether to merge the main section of fileset manifests;
      * value is true if filesetmanifest is 'merge'
      */
     private boolean mergeManifestsMain = true;
 
     /**
      * the manifest specified by the 'manifest' attribute *
      */
     private Manifest manifest;
 
     /**
      * The file found from the 'manifest' attribute. This can be
      * either the location of a manifest, or the name of a jar added
      * through a fileset. If its the name of an added jar, the
      * manifest is looked for in META-INF/MANIFEST.MF
      */
     private File manifestFile;
 
     /**
      * jar index is JDK 1.3+ only
      *
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     private boolean index = false;
 
     /**
      * whether to really create the archive in createEmptyZip, will
      * get set in getResourcesToAdd.
      */
     private boolean createEmpty = false;
 
     /**
      * Stores all files that are in the root of the archive (i.e. that
      * have a name that doesn't contain a slash) so they can get
      * listed in the index.
      * <p/>
      * Will not be filled unless the user has asked for an index.
      */
     private final List<String> rootEntries;
 
     /**
      * Path containing jars that shall be indexed in addition to this archive.
      *
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     private List<String> indexJars;
 
     /**
      * Creates a minimal default manifest with {@code Manifest-Version: 1.0} only.
      */
     private boolean minimalDefaultManifest = false;
 
     /**
      * constructor
      */
     public JarArchiver() {
         super();
         archiveType = "jar";
         setEncoding("UTF8");
         rootEntries = new ArrayList<>();
     }
 
     /**
      * Set whether or not to create an index list for classes.
      * This may speed up classloading in some cases.
      *
      * @param flag true to create an index
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     public void setIndex(boolean flag) {
         index = flag;
     }
 
     /**
      * Set whether the default manifest is minimal, thus having only {@code Manifest-Version: 1.0} in it.
      *
      * @param minimalDefaultManifest true to create minimal default manifest
      */
     public void setMinimalDefaultManifest(boolean minimalDefaultManifest) {
         this.minimalDefaultManifest = minimalDefaultManifest;
     }
 
     @SuppressWarnings({"JavaDoc", "UnusedDeclaration"})
     @Deprecated // Useless method. Manifests should be UTF-8 by convention. Calling this setter does nothing
     public void setManifestEncoding(String manifestEncoding) {}
 
     /**
      * Allows the manifest for the archive file to be provided inline
      * in the build file rather than in an external file.
      *
      * @param newManifest The new manifest
      *
      * @throws ManifestException
      */
     public void addConfiguredManifest(Manifest newManifest) throws ManifestException {
         if (configuredManifest == null) {
             configuredManifest = newManifest;
         } else {
             JdkManifestFactory.merge(configuredManifest, newManifest, false);
         }
         savedConfiguredManifest = configuredManifest;
     }
 
     /**
      * The manifest file to use. This can be either the location of a manifest, or the name of a jar added through a
      * fileset. If its the name of an added jar, the task expects the manifest to be in the jar at META-INF/MANIFEST.MF.
      *
      * @param manifestFile the manifest file to use.
      *
      * @throws org.codehaus.plexus.archiver.ArchiverException
      */
     @SuppressWarnings({"UnusedDeclaration"})
     public void setManifest(File manifestFile) throws ArchiverException {
         if (!manifestFile.exists()) {
             throw new ArchiverException("Manifest file: " + manifestFile + " does not exist.");
         }
 
         this.manifestFile = manifestFile;
     }
 
     private Manifest getManifest(File manifestFile) throws ArchiverException {
         try (InputStream in = fileInputStream(manifestFile)) {
             return getManifest(in);
         } catch (IOException e) {
             throw new ArchiverException(
                     "Unable to read manifest file: " + manifestFile + " (" + e.getMessage() + ")", e);
         }
     }
 
     private Manifest getManifest(InputStream is) throws ArchiverException {
         try {
             return new Manifest(is);
         } catch (IOException e) {
             throw new ArchiverException("Unable to read manifest file" + " (" + e.getMessage() + ")", e);
         }
     }
 
     /**
      * Behavior when a Manifest is found in a zipfileset or zipgroupfileset file.
      * Valid values are "skip", "merge", and "mergewithoutmain".
      * "merge" will merge all of manifests together, and merge this into any
      * other specified manifests.
      * "mergewithoutmain" merges everything but the Main section of the manifests.
      * Default value is "skip".
      * <p>
      * Note: if this attribute's value is not "skip", the created jar will not
      * be readable by using java.util.jar.JarInputStream</p>
      *
      * @param config setting for found manifest behavior.
      */
     @SuppressWarnings({"UnusedDeclaration"})
     public void setFilesetmanifest(FilesetManifestConfig config) {
         filesetManifestConfig = config;
         mergeManifestsMain = FilesetManifestConfig.merge == config;
 
         if ((filesetManifestConfig != null) && filesetManifestConfig != FilesetManifestConfig.skip) {
 
             doubleFilePass = true;
         }
     }
 
     /**
      * @param indexJar The indexjar
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     public void addConfiguredIndexJars(File indexJar) {
         if (indexJars == null) {
             indexJars = new ArrayList<>();
         }
         indexJars.add(indexJar.getAbsolutePath());
     }
 
     @Override
     protected void initZipOutputStream(ConcurrentJarCreator zOut) throws ArchiverException, IOException {
         if (!skipWriting) {
             Manifest jarManifest = createManifest();
             writeManifest(zOut, jarManifest);
         }
     }
 
     @Override
     protected boolean hasVirtualFiles() {
         getLogger().debug("\n\n\nChecking for jar manifest virtual files...\n\n\n");
         System.out.flush();
 
         return (configuredManifest != null) || (manifest != null) || (manifestFile != null) || super.hasVirtualFiles();
     }
 
     /**
      * Creates the manifest to be added to the JAR archive.
      * Sub-classes may choose to override this method
      * in order to inspect or modify the JAR manifest file.
      *
      * @return the manifest for the JAR archive.
      *
      * @throws ArchiverException
      */
     protected Manifest createManifest() throws ArchiverException {
         Manifest finalManifest = Manifest.getDefaultManifest(minimalDefaultManifest);
 
         if ((manifest == null) && (manifestFile != null)) {
             // if we haven't got the manifest yet, attempt to
             // get it now and have manifest be the final merge
             manifest = getManifest(manifestFile);
         }
 
         /*
          * Precedence: manifestFile wins over inline manifest,
          * over manifests read from the filesets over the original
          * manifest.
          *
          * merge with null argument is a no-op
          */
         if (isInUpdateMode()) {
             JdkManifestFactory.merge(finalManifest, originalManifest, false);
         }
         JdkManifestFactory.merge(finalManifest, filesetManifest, false);
         JdkManifestFactory.merge(finalManifest, configuredManifest, false);
         JdkManifestFactory.merge(finalManifest, manifest, !mergeManifestsMain);
 
         return finalManifest;
     }
 
     private void writeManifest(ConcurrentJarCreator zOut, Manifest manifest) throws IOException, ArchiverException {
         for (Enumeration<String> e = manifest.getWarnings(); e.hasMoreElements(); ) {
             getLogger().warn("Manifest warning: " + e.nextElement());
         }
 
         zipDir(null, zOut, "META-INF/", DEFAULT_DIR_MODE, getEncoding());
 
         // time to write the manifest
         ByteArrayOutputStream baos = new ByteArrayOutputStream(128);
         manifest.write(baos);
         InputStreamSupplier in = () -> new ByteArrayInputStream(baos.toByteArray());
 
         super.zipFile(in, zOut, MANIFEST_NAME, System.currentTimeMillis(), null, DEFAULT_FILE_MODE, null, false);
         super.initZipOutputStream(zOut);
     }
 
     @Override
     protected void finalizeZipOutputStream(ConcurrentJarCreator zOut) throws IOException, ArchiverException {
         if (index) {
             createIndexList(zOut);
         }
     }
 
     /**
      * Create the index list to speed up classloading.
      * This is a JDK 1.3+ specific feature and is enabled by default. See
      * <a href="http://java.sun.com/j2se/1.3/docs/guide/jar/jar.html#JAR%20Index">
      * the JAR index specification</a> for more details.
      *
      * @param zOut the zip stream representing the jar being built.
      *
      * @throws IOException thrown if there is an error while creating the
      * index and adding it to the zip stream.
      * @throws org.codehaus.plexus.archiver.ArchiverException
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     private void createIndexList(ConcurrentJarCreator zOut) throws IOException, ArchiverException {
         ByteArrayOutputStream baos = new ByteArrayOutputStream(128);
         // encoding must be UTF8 as specified in the specs.
         PrintWriter writer = new PrintWriter(new OutputStreamWriter(baos, StandardCharsets.UTF_8));
 
         // version-info blankline
         writer.println("JarIndex-Version: 1.0");
         writer.println();
 
         // header newline
         writer.println(getDestFile().getName());
 
         // filter out META-INF if it doesn't contain anything other than the index and manifest.
         // this is what sun.misc.JarIndex does, guess we ought to be consistent.
         Set<String> filteredDirs = addedDirs.allAddedDirs();
         // our added dirs always have a trailing slash
         if (filteredDirs.contains(META_INF_NAME + '/')) {
             boolean add = false;
             for (String entry : entries.keySet()) {
                 if (entry.startsWith(META_INF_NAME + '/')
                         && !entry.equals(INDEX_NAME)
                         && !entry.equals(MANIFEST_NAME)) {
                     add = true;
                     break;
                 }
             }
             if (!add) {
                 filteredDirs.remove(META_INF_NAME + '/');
             }
         }
         writeIndexLikeList(new ArrayList<>(filteredDirs), rootEntries, writer);
         writer.println();
 
         if (indexJars != null) {
             java.util.jar.Manifest mf = createManifest();
             String classpath = mf.getMainAttributes().getValue(ManifestConstants.ATTRIBUTE_CLASSPATH);
             String[] cpEntries = null;
             if (classpath != null) {
                 StringTokenizer tok = new StringTokenizer(classpath, " ");
                 cpEntries = new String[tok.countTokens()];
                 int c = 0;
                 while (tok.hasMoreTokens()) {
                     cpEntries[c++] = tok.nextToken();
                 }
             }
 
             for (String indexJar : indexJars) {
                 String name = findJarName(indexJar, cpEntries);
                 if (name != null) {
                     List<String> dirs = new ArrayList<>();
                     List<String> files = new ArrayList<>();
                     grabFilesAndDirs(indexJar, dirs, files);
                     if (dirs.size() + files.size() > 0) {
                         writer.println(name);
                         writeIndexLikeList(dirs, files, writer);
                         writer.println();
                     }
                 }
             }
         }
 
         writer.flush();
 
         InputStreamSupplier in = () -> new ByteArrayInputStream(baos.toByteArray());
 
         super.zipFile(in, zOut, INDEX_NAME, System.currentTimeMillis(), null, DEFAULT_FILE_MODE, null, true);
     }
 
     /**
      * Overridden from Zip class to deal with manifests and index lists.
      */
     @Override
     protected void zipFile(
             InputStreamSupplier is,
             ConcurrentJarCreator zOut,
             String vPath,
             long lastModified,
             File fromArchive,
             int mode,
             String symlinkDestination,
             boolean addInParallel)
             throws IOException, ArchiverException {
         if (MANIFEST_NAME.equalsIgnoreCase(vPath)) {
             if (!doubleFilePass || skipWriting) {
                 try (InputStream manifestInputStream = is.get()) {
                     filesetManifest(fromArchive, manifestInputStream);
                 }
             }
         } else if (INDEX_NAME.equalsIgnoreCase(vPath) && index) {
             getLogger()
                     .warn("Warning: selected " + archiveType + " files include a META-INF/INDEX.LIST which will"
                             + " be replaced by a newly generated one.");
         } else {
             if (index && !vPath.contains("/")) {
                 rootEntries.add(vPath);
             }
             super.zipFile(is, zOut, vPath, lastModified, fromArchive, mode, symlinkDestination, addInParallel);
         }
     }
 
     private void filesetManifest(File file, InputStream is) throws ArchiverException {
         if ((manifestFile != null) && manifestFile.equals(file)) {
             // If this is the same name specified in 'manifest', this
             // is the manifest to use
             getLogger().debug("Found manifest " + file);
             if (is != null) {
                 manifest = getManifest(is);
             } else {
                 manifest = getManifest(file);
             }
         } else if ((filesetManifestConfig != null) && filesetManifestConfig != FilesetManifestConfig.skip) {
             // we add this to our group of fileset manifests
             getLogger().debug("Found manifest to merge in file " + file);
 
             Manifest newManifest;
             if (is != null) {
                 newManifest = getManifest(is);
             } else {
                 newManifest = getManifest(file);
             }
 
             if (filesetManifest == null) {
                 filesetManifest = newManifest;
             } else {
                 JdkManifestFactory.merge(filesetManifest, newManifest, false);
             }
         }
     }
 
     @Override
     protected boolean createEmptyZip(File zipFile) throws ArchiverException {
         if (!createEmpty) {
             return true;
         }
 
         try {
             getLogger().debug("Building MANIFEST-only jar: " + getDestFile().getAbsolutePath());
             zipArchiveOutputStream =
                     new ZipArchiveOutputStream(bufferedOutputStream(fileOutputStream(getDestFile(), "jar")));
 
             zipArchiveOutputStream.setEncoding(getEncoding());
             if (isCompress()) {
                 zipArchiveOutputStream.setMethod(ZipArchiveOutputStream.DEFLATED);
             } else {
                 zipArchiveOutputStream.setMethod(ZipArchiveOutputStream.STORED);
             }
             ConcurrentJarCreator ps = new ConcurrentJarCreator(
                     isRecompressAddedZips(), Runtime.getRuntime().availableProcessors());
             initZipOutputStream(ps);
             finalizeZipOutputStream(ps);
         } catch (IOException ioe) {
             throw new ArchiverException("Could not create almost empty JAR archive (" + ioe.getMessage() + ")", ioe);
         } finally {
             // Close the output stream.
             // IOUtil.close( zOut );
             createEmpty = false;
         }
         return true;
     }
 
     /**
      * Make sure we don't think we already have a MANIFEST next time this task
      * gets executed.
      *
      * @see ZipArchiver#cleanUp
      */
     @Override
     protected void cleanUp() throws IOException {
         super.cleanUp();
 
         // we want to save this info if we are going to make another pass
         if (!doubleFilePass || !skipWriting) {
             manifest = null;
             configuredManifest = savedConfiguredManifest;
             filesetManifest = null;
             originalManifest = null;
         }
         rootEntries.clear();
     }
 
     /**
      * reset to default values.
      *
      * @see ZipArchiver#reset
      */
     @Override
     public void reset() {
         super.reset();
         configuredManifest = null;
         filesetManifestConfig = null;
         mergeManifestsMain = false;
         manifestFile = null;
         index = false;
     }
 
     public enum FilesetManifestConfig {
         skip,
         merge,
         mergewithoutmain
     }
 
     /**
      * Writes the directory entries from the first and the filenames
      * from the second list to the given writer, one entry per line.
      *
      * @param dirs The directories
      * @param files The files
      * @param writer The printwriter ;)
      * @deprecated See <a href="https://bugs.openjdk.org/browse/JDK-8302819">JDK-8302819</a>
      */
     @Deprecated
     protected final void writeIndexLikeList(List<String> dirs, List<String> files, PrintWriter writer) {
         // JarIndex is sorting the directories by ascending order.
         // it has no value but cosmetic since it will be read into a
         // hashtable by the classloader, but we'll do so anyway.
         Collections.sort(dirs);
         Collections.sort(files);
         for (String dir : dirs) {
             // try to be smart, not to be fooled by a weird directory name
             dir = dir.replace('\\', '/');
             if (dir.startsWith("./")) {
                 dir = dir.substring(2);
             }
             while (dir.startsWith("/")) {
                 dir = dir.substring(1);
             }
             int pos = dir.lastIndexOf('/');
             if (pos != -1) {
                 dir = dir.substring(0, pos);
             }
 
             // name newline
             writer.println(dir);
         }
 
         for (String file : files) {
             writer.println(file);
         }
     }
 
     /**
      * try to guess the name of the given file.
      * <p>
      * If this jar has a classpath attribute in its manifest, we
      * can assume that it will only require an index of jars listed
      * there. try to find which classpath entry is most likely the
      * one the given file name points to.</p>
      * <p>
      * In the absence of a classpath attribute, assume the other
      * files will be placed inside the same directory as this jar and
      * use their basename.</p>
      * <p>
      * if there is a classpath and the given file doesn't match any
      * of its entries, return null.</p>
      *
      * @param fileName .
      * @param classpath .
      *
      * @return The guessed name
      */
     protected static String findJarName(String fileName, String[] classpath) {
         if (classpath == null) {
             return new File(fileName).getName();
         }
         fileName = fileName.replace(File.separatorChar, '/');
 
         // longest match comes first
         SortedMap<String, String> matches =
                 new TreeMap<>(Comparator.comparingInt(String::length).reversed());
 
         for (String aClasspath : classpath) {
             if (fileName.endsWith(aClasspath)) {
                 matches.put(aClasspath, aClasspath);
             } else {
                 int slash = aClasspath.indexOf("/");
                 String candidate = aClasspath;
                 while (slash > -1) {
                     candidate = candidate.substring(slash + 1);
                     if (fileName.endsWith(candidate)) {
                         matches.put(candidate, aClasspath);
                         break;
                     }
                     slash = candidate.indexOf("/");
                 }
             }
         }
 
         return matches.size() == 0 ? null : matches.get(matches.firstKey());
     }
 
     /**
      * Grab lists of all root-level files and all directories
      * contained in the given archive.
      *
      * @param file .
      * @param files .
      * @param dirs .
      *
      * @throws java.io.IOException
      */
     private void grabFilesAndDirs(String file, List<String> dirs, List<String> files) throws IOException {
         File zipFile = new File(file);
         if (!zipFile.exists()) {
             getLogger().error("JarArchive skipping non-existing file: " + zipFile.getAbsolutePath());
         } else if (zipFile.isDirectory()) {
             getLogger().info("JarArchiver skipping indexJar " + zipFile + " because it is not a jar");
         } else {
             try (ZipFile zf = new ZipFile(file, "utf-8")) {
                 Enumeration<ZipArchiveEntry> entries = zf.getEntries();
                 HashSet<String> dirSet = new HashSet<>();
                 while (entries.hasMoreElements()) {
                     ZipArchiveEntry ze = entries.nextElement();
                     String name = ze.getName();
                     // avoid index for manifest-only jars.
                     if (!name.equals(META_INF_NAME)
                             && !name.equals(META_INF_NAME + '/')
                             && !name.equals(INDEX_NAME)
                             && !name.equals(MANIFEST_NAME)) {
                         if (ze.isDirectory()) {
                             dirSet.add(name);
                         } else if (!name.contains("/")) {
                             files.add(name);
                         } else {
                             // a file, not in the root
                             // since the jar may be one without directory
                             // entries, add the parent dir of this file as
                             // well.
                             dirSet.add(name.substring(0, name.lastIndexOf("/") + 1));
                         }
                     }
                 }
                 dirs.addAll(dirSet);
             }
         }
     }
 
     /**
      * Override the behavior of the Zip Archiver to match the output of the JAR tool.
      *
      * @param zipEntry to set the last modified time
      * @param lastModifiedTime to set in the zip entry only if {@link #getLastModifiedTime()} returns null
      */
     @Override
     protected void setZipEntryTime(ZipArchiveEntry zipEntry, long lastModifiedTime) {
         if (getLastModifiedTime() != null) {
             lastModifiedTime = getLastModifiedTime().toMillis();
         }
 
         // The JAR tool does not round up, so we keep that behavior here (JDK-8277755).
         zipEntry.setTime(lastModifiedTime);
     }
 }